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1

Radiomics: the process and the challenges

Virendra Kumar, Yuhua Gu, Satrajit Basu, Anders Berglund, Steven A. Eschrich, Matthew B. Schabath, Kenneth Forster, Hugo J.W.L. Aerts, Andre Dekker, David Fenstermacher, Dmitry B. Goldgof, Lawrence O.

Journal:

Magnetic Resonance Imaging

Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

2

Relative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms

Stewart, Paul A., Fang, Bin, Slebos, Robbert J. C., Zhang, Guolin, Borne, Adam L., Fellows, Katherine, Teer, Jamie K., Chen, Y. Ann, Welsh, Eric, Eschrich, Steven A., Haura, Eric B., Koomen, John M.

Journal:

Year:

2017

Language:

english

File:

PDF, 1001 KB

english, 2017

3

An Exact Test for Detecting Inconsistency in Readers Interpretation Over Time in Screening Mammograms

Ji-Hyun Lee, Steven Eschrich, Craig Beam

Journal:

Biometrical Journal

Year:

2007

Language:

english

File:

PDF, 168 KB

english, 2007

4

Down-regulation of Bax-interacting factor-1 in colorectal adenocarcinoma

Domenico Coppola, Farah Khalil, Steven A. Eschrich, David Boulware, Timothy Yeatman, Hong-Gang Wang

Journal:

Year:

2008

Language:

english

File:

PDF, 213 KB

english, 2008

5

Elucidation of a protein signature discriminating six common types of adenocarcinoma

Gregory C. Bloom, Steven Eschrich, Jeff X. Zhou, Domenico Coppola, Timothy J. Yeatman

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 298 KB

english, 2007

6

Insig2 is associated with colon tumorigenesis and inhibits Bax-mediated apoptosis

Chang Gong Li, Mike Gruidl, Steven Eschrich, Susan McCarthy, Hong-Gang Wang, Mark G. Alexandrow, Timothy J. Yeatman

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 697 KB

english, 2008

7

Systems Biology Modeling of the Radiation Sensitivity Network: A Biomarker Discovery Platform

Steven Eschrich, Hongling Zhang, Haiyan Zhao, David Boulware, Ji-Hyun Lee, Gregory Bloom, Javier F. Torres-Roca

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2009

Language:

english

File:

PDF, 529 KB

english, 2009

8

The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis

Adam I Riker, Steven A Enkemann, Oystein Fodstad, Suhu Liu, Suping Ren, Christopher Morris, Yaguang Xi, Paul Howell, Brandon Metge, Rajeev S Samant, Lalita A Shevde, Wenbin Li, Steven Eschrich, Adil D

Journal:

BMC Medical Genomics

Year:

2008

Language:

english

File:

PDF, 784 KB

english, 2008

9

A Gene Expression Model of Intrinsic Tumor Radiosensitivity: Prediction of Response and Prognosis After Chemoradiation

Steven A. Eschrich, Jimmy Pramana, Hongling Zhang, Haiyan Zhao, David Boulware, Ji-Hyun Lee, Gregory Bloom, Caio Rocha-Lima, Scott Kelley, Douglas P. Calvin, Timothy J. Yeatman, Adrian C. Begg, Javier

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2009

Language:

english

File:

PDF, 209 KB

english, 2009

10

A chemical and phosphoproteomic characterization of dasatinib action in lung cancer

Li, Jiannong, Rix, Uwe, Fang, Bin, Bai, Yun, Edwards, Arthur, Colinge, Jacques, Bennett, Keiryn L, Gao, Jingchun, Song, Lanxi, Eschrich, Steven

Journal:

Nature Chemical Biology

Year:

2010

Language:

english

File:

PDF, 817 KB

english, 2010

11

Gene expression–based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study

Shedden, Kerby, Taylor, Jeremy M G, Enkemann, Steven A, Tsao, Ming-Sound, Yeatman, Timothy J, Gerald, William L, Eschrich, Steven, Jurisica, Igor, Giordano, Thomas J, Misek, David E

Journal:

Nature Medicine

Year:

2008

Language:

english

File:

PDF, 211 KB

english, 2008

12

Observations on penetration of Barley leaves by the aphidRhopalosiphum maidis(Fitch)

Ray F. Evert, Walter Eschrich, Susan E. Eichhorn, Steven T. Limbach

Journal:

Year:

1973

Language:

english

File:

PDF, 4.96 MB

english, 1973

13

Methods for investigation of targeted kinase inhibitor therapy using chemical proteomics and phosphorylation profiling

Bin Fang, Eric B. Haura, Keiran S. Smalley, Steven A. Eschrich, John M. Koomen

Journal:

Biochemical Pharmacology

Year:

2010

Language:

english

File:

PDF, 452 KB

english, 2010

14

Molecular fingerprint of green tea in TRAMP model of prostate neoplasia

Jimmy C. Sung, Alice Lee, Steven Eschrich, Timothy Yeatman, Saverio Bettuzzi

Journal:

Journal of the American College of Surgeons

Year:

2005

Language:

english

File:

PDF, 56 KB

english, 2005

15

Partial Least Squares (PLS) Applied to Medical Bioinformatics

Walker H. Land Jr., William Ford, Jin-Woo Park, Ravi Mathur, Nathan Hotchkiss, John Heine, Steven Eschrich, Xingye Qiao, Timothy Yeatman

Journal:

Procedia Computer Science

Year:

2011

Language:

english

File:

PDF, 440 KB

english, 2011

16

Evolutionary computation with noise perturbation and cluster analysis to discover biomarker sets

Ravi Mathur, J. David Schaffer, Walker H. LandJr., John J. Heine, Steven Eschrich, Timothy Yeatman

Journal:

Procedia Computer Science

Year:

2011

Language:

english

File:

PDF, 923 KB

english, 2011

17

DNA microarrays and data analysis: an overview

Steven Eschrich, Timothy J. Yeatman

Journal:

Year:

2004

Language:

english

File:

PDF, 185 KB

english, 2004

18

Biomarkers to Discern Transplantation Tolerance after Allogeneic Hematopoietic Cell Transplantation

Joseph Pidala, Gregory C. Bloom, Steven Enkemann, Steven Eschrich, Johnathan Lancaster, Claudio Anasetti

Journal:

Biology of Blood and Marrow Transplantation

Year:

2010

Language:

english

File:

PDF, 170 KB

english, 2010

19

Multi-Platform, Multi-Site, Microarray-Based Human Tumor Classification

Greg Bloom, Ivana V. Yang, David Boulware, Ka Yin Kwong, Domenico Coppola, Steven Eschrich, John Quackenbush, Timothy J. Yeatman

Journal:

The American Journal of Pathology

Year:

2004

Language:

english

File:

PDF, 1.08 MB

english, 2004

20

A Smad4-modulated Wnt target gene expression profile identifies high-risk colorectal cancer patients

J. Joshua Smith, Tanner J. Freeman, Xi Chen, Natasha G. Deane, Mary K. Washington, Frank Revetta, Joseph T. Roland, Steven Eschrich, Timothy J. Yeatman, Robert D. Beauchamp

Journal:

Journal of the American College of Surgeons

Year:

2012

Language:

english

File:

PDF, 113 KB

english, 2012

21

Targeting CSE1L in colorectal cancer

Jose M. Pimiento, Domenico Coppola, Anying Zhang, Kazim Husain, Steven Eschrich, Dung-Tsa Chen, Mokenge P. Malafa

Journal:

Journal of the American College of Surgeons

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

22

Informatics methods to enable sharing of quantitative imaging research data

Mia A. Levy, John B. Freymann, Justin S. Kirby, Andriy Fedorov, Fiona M. Fennessy, Steven A. Eschrich, Anders E. Berglund, David A. Fenstermacher, Yongqiang Tan, Xiaotao Guo, Thomas L. Casavant, Bartl

Journal:

Magnetic Resonance Imaging

Year:

2012

Language:

english

File:

PDF, 285 KB

english, 2012

23

Experimentally Derived Metastasis Gene Expression Profile Predicts Recurrence and Death in Patients With Colon Cancer

J. Joshua Smith, Natasha G. Deane, Fei Wu, Nipun B. Merchant, Bing Zhang, Aixiang Jiang, Pengcheng Lu, J. Chad Johnson, Carl Schmidt, Christina E. Bailey, Steven Eschrich, Christian Kis, Shawn Levy, M

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 4.59 MB

english, 2010

24

Claudin-1 Up-regulates the Repressor ZEB-1 to Inhibit E-Cadherin Expression in Colon Cancer Cells

Amar B. Singh, Ashok Sharma, J. Joshua Smith, Moorthy Krishnan, Xi Chen, Steven Eschrich, Mary K. Washington, Timothy J. Yeatman, R. Daniel Beauchamp, Punita Dhawan

Journal:

Gastroenterology

Year:

2011

Language:

english

File:

PDF, 4.87 MB

english, 2011

25

Smad4-Mediated Signaling Inhibits Intestinal Neoplasia by Inhibiting Expression of β-Catenin

Tanner J. Freeman, J. Joshua Smith, Xi Chen, M. Kay Washington, Joseph T. Roland, Anna L. Means, Steven A. Eschrich, Timothy J. Yeatman, Natasha G. Deane, R. Daniel Beauchamp

Journal:

Gastroenterology

Year:

2012

Language:

english

File:

PDF, 1.82 MB

english, 2012

26

Gene Expression Profiles as Predictors of Poor Outcomes in Stage II Colorectal Cancer: A Systematic Review and Meta-analysis

An-Ting T. Lu, Shelley R. Salpeter, Anthony E. Reeve, Steven Eschrich, Patrick G. Johnston, Alain J. Barrier, Francois Bertucci, Nicholas S. Buckley, Edwin E. Salpeter, Albert Y. Lin

Journal:

Clinical Colorectal Cancer

Year:

2009

Language:

english

File:

PDF, 136 KB

english, 2009

27

Iterative rank-order normalization of gene expression microarray data

Eric A Welsh, Steven A Eschrich, Anders E Berglund…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 986 KB

english, 2013

28

Sa1993 Claudin-3 Expression Associates With Colonic Epithelial Differentiation and Loss of Its Expression Correlates With Colon Carcinogenesis and Poor Patient Survival

Chen, Zhimin, Ahmad, Rizwan, Chen, Xi, Eschrich, Steven, Yeatman, Timothy J., Beauchamp, Robert D., Washington, Kay, Dhawan, Punita, Singh, Amar B.

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 142 KB

english, 2013

29

810 Molecular Predictors of Response to Neoadjuvant Topotecan and Radiation for Rectal Cancer: Correlative Study to a Phase I Trial

Santillan, Alfredo A., Dinwoodie, William, Yeatman, Timothy J., Eschrich, Steven A., Sullivan, Daniel, Rocha-Lima, Caio S., Greenberg, Harvey M., Chodkiewicz, Catherine, Trotti, Andy, Marcet, Jorge, D

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 218 KB

english, 2009

30

[IEEE 2010 IEEE International Conference on Systems, Man and Cybernetics - SMC - Istanbul, Turkey (2010.10.10-2010.10.13)] 2010 IEEE International Conference on Systems, Man and Cybernetics - Filtering for improved gene selection on microarray data

Canul-Reich, Juana, Hall, Lawrence O., Goldgof, Dmitry, Eschrich, Steven A.

Year:

2010

Language:

english

File:

PDF, 1.89 MB

english, 2010

31

[IEEE 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Vancouver, BC (2008.08.20-2008.08.25)] 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Toward a measure of classification complexity in gene expression signatures

Kamath, Vidya, Yeatman, Timothy J., Eschrich, Steven A.

Year:

2008

Language:

english

File:

PDF, 171 KB

english, 2008

32

Mass Spectrometry Mapping of Epidermal Growth Factor Receptor Phosphorylation Related to Oncogenic Mutations and Tyrosine Kinase Inhibitor Sensitivity

Zhang, Guolin, Fang, Bin, Liu, Richard Z., Lin, Huiyi, Kinose, Fumi, Bai, Yun, Oguz, Umut, Remily-Wood, Elizabeth R., Li, Jiannong, Altiok, Soner, Eschrich, Steven, Koomen, John, Haura, Eric B.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.41 MB

english, 2011

33

Quantification of β-Catenin Signaling Components in Colon Cancer Cell Lines, Tissue Sections, and Microdissected Tumor Cells using Reaction Monitoring Mass Spectrometry

Chen, Yi, Gruidl, Mike, Remily-Wood, Elizabeth, Liu, Richard Z., Eschrich, Steven, Lloyd, Mark, Nasir, Aejaz, Bui, Marilyn M., Huang, Emina, Shibata, David, Yeatman, Timothy, Koomen, John M.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.97 MB

english, 2010

34

A Predictive Risk Probability Approach for Microarray Data with Survival as an Endpoint

Chen, Dung-Tsa, Schell, Michael J., Chen, James J., Fulp, William J., Eschrich, Steven, Yeatman, Timothy

Journal:

Journal of Biopharmaceutical Statistics

Year:

2008

Language:

english

File:

PDF, 1.00 MB

english, 2008

35

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Multivariate Feature Selection using Random Subspace Classifiers for Gene Expression Data

Kamath, Vidya P., Hall, Lawrence O., Yeatman, Timothy J., Eschrich, Steven. A

Year:

2007

Language:

english

File:

PDF, 3.38 MB

english, 2007

36

[IEEE 2011 IEEE International Conference on Systems, Man and Cybernetics - SMC - Anchorage, AK, USA (2011.10.9-2011.10.12)] 2011 IEEE International Conference on Systems, Man, and Cybernetics - Procedure for stability analysis of gene selection from cross-site gene expression data

Korecki, John N., Hall, Lawrence O., Goldgof, Dmitry, Eschrich, Steven

Year:

2011

Language:

english

File:

PDF, 662 KB

english, 2011

37

[IEEE 2008 IEEE International Conference on Systems, Man and Cybernetics (SMC) - Singapore, Singapore (2008.10.12-2008.10.15)] 2008 IEEE International Conference on Systems, Man and Cybernetics - Feature selection for microarray data by AUC analysis

Canul-Reich, Juana, Hall, Lawrence O., Goldgof, Dmitry, Eschrich, Steven A.

Year:

2008

Language:

english

File:

PDF, 759 KB

english, 2008

38

[IEEE 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Vancouver, BC (2008.08.20-2008.08.25)] 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Tissue-specific RMA models to incrementally normalize Affymetrix GeneChip data

Eschrich, Steven A., Hoerter, Andrew M., Bloom, Gregory C., Fenstermacher, David A.

Year:

2008

Language:

english

File:

PDF, 1.00 MB

english, 2008

39

[IEEE 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Vancouver, BC (2008.08.20-2008.08.25)] 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Towards a framework for analysis of biophotonic images of mouse models of cancer

Kamath, Vidya, Goldgof, Dmitry, Argilagos, Raul, Hazlehurst, Lori, Eschrich, Steven

Year:

2008

Language:

english

File:

PDF, 761 KB

english, 2008

40

Is Error-Based Pruning Redeemable?

Hall, Lawrence O., Bowyer, Kevin W., Banfield, Robert E., Eschrich, Steven, Collins, Richard

Journal:

International Journal of Artificial Intelligence Tools

Year:

2003

Language:

english

File:

PDF, 926 KB

english, 2003

41

ITERATIVE FEATURE PERTURBATION AS A GENE SELECTOR FOR MICROARRAY DATA

CANUL-REICH, JUANA, HALL, LAWRENCE O., GOLDGOF, DMITRY B., KORECKI, JOHN N., ESCHRICH, STEVEN

Journal:

International Journal of Pattern Recognition and Artificial Intelligence

Year:

2012

Language:

english

File:

PDF, 506 KB

english, 2012

42

Epigenomic Characterization of Locally Advanced Anal Cancer

Siegel, Erin M., Eschrich, Steven, Winter, Kathryn, Riggs, Bridget, Berglund, Anders, Ajidahun, Abidemi, Simko, Jeff, Moughan, Jennifer, Ajani, Jaffer, Magliocco, Anthony, Elahi, Abul, Hoffe, Sarah, S

Journal:

Diseases of the Colon & Rectum

Year:

2014

Language:

english

File:

PDF, 457 KB

english, 2014

43

Differences Between Colon Cancer Primaries and Metastases Using a Molecular Assay for Tumor Radiation Sensitivity Suggest Implications for Potential Oligometastatic SBRT Patient Selection

Ahmed, Kamran A., Fulp, William J., Berglund, Anders E., Hoffe, Sarah E., Dilling, Thomas J., Eschrich, Steven A., Shridhar, Ravi, Torres-Roca, Javier F.

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2015

Language:

english

File:

PDF, 584 KB

english, 2015

44

Integration of a Radiosensitivity Molecular Signature into the Assessment of Local Recurrence Risk in Breast Cancer

Torres-Roca, Javier F., Fulp, William J., Caudell, Jimmy J., Servant, Nicholas, Bollet, Marc A., van de Vijver, Marc, Naghavi, Arash O., Harris, Eleanor E., Eschrich, Steven

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

45

Semiquantitative Computed Tomography Characteristics for Lung Adenocarcinoma and Their Association With Lung Cancer Survival

Wang, Hua, Schabath, Matthew B., Liu, Ying, Berglund, Anders E., Bloom, Gregory C., Kim, Jongphil, Stringfield, Olya, Eikman, Edward A., Klippenstein, Donald L., Heine, John J., Eschrich, Steven A., Y

Journal:

Clinical Lung Cancer

Year:

2015

Language:

english

File:

PDF, 5.13 MB

english, 2015

46

Radiosensitivity index predicts for survival with adjuvant radiation in resectable pancreatic cancer

Strom, Tobin, Hoffe, Sarah E., Fulp, William, Frakes, Jessica, Coppola, Domenico, Springett, Gregory M., Malafa, Mokenge P., Harris, Cynthia L., Eschrich, Steven A., Torres-Roca, Javier F., Shridhar,

Journal:

Radiotherapy and Oncology

Year:

2015

Language:

english

File:

PDF, 641 KB

english, 2015

47

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, FL (Saturday 7 February 2009)] Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging - Automated registration and quantification of biophotonic mouse images using a whole body atlas

Soria, Michael, Hu, Xiaoping P., Clough, Anne V., Eschrich, Steven, Goldgof, Dmitry

Year:

2009

Language:

english

File:

PDF, 418 KB

english, 2009

48

Radiosensitivity differences between liver metastases based on primary histology suggest implications for clinical outcomes following SBRT

Ahmed, Kamran A., Caudell, Jimmy J., El-Haddad, Ghassan, Berglund, Anders E., Welsh, Eric A., Yue, Binglin, Hoffe, Sarah E., Naghavi, Arash O., Abuodeh, Yazan A., Frakes, Jessica M., Eschrich, Steven

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2016

Language:

english

File:

PDF, 1.14 MB

english, 2016

49

Association Between Computed Tomographic Features and Kirsten Rat Sarcoma Viral Oncogene Mutations in Patients With Stage I Lung Adenocarcinoma and Their Prognostic Value

Wang, Hua, Schabath, Matthew B., Liu, Ying, Stringfield, Olya, Balagurunathan, Yoganand, Heine, John J., Eschrich, Steven A., Ye, Zhaoxiang, Gillies, Robert J.

Journal:

Clinical Lung Cancer

Year:

2015

Language:

english

File:

PDF, 567 KB

english, 2015

50

Su1145 Expression of CAS/CSE1L, the Cellular Apoptosis Susceptibility Protein, Correlates With Neoplastic Progression in Barrett's Esophagus

Jiang, Kun, Cowden, Daniel, Neill, Kevin G., Klapman, Jason B., Eschrich, Steven, Pimiento, José M., Malafa, Mokenge P., Coppola, Domenico

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016